Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0541
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   110   1e-25
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   110   2e-25
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    31   0.10 
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   2.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   6.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   8.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   8.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.9  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   8.9  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  110 bits (265), Expect = 1e-25
 Identities = 45/81 (55%), Positives = 66/81 (81%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D++
Sbjct: 57  KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVR 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG ++   FD G++L+
Sbjct: 116 LPEGELGNEIEEGFDEGRDLI 136


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  110 bits (264), Expect = 2e-25
 Identities = 45/81 (55%), Positives = 66/81 (81%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D++
Sbjct: 57  KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVR 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG ++   F+ GK+L+
Sbjct: 116 LPEGELGNEIEEGFEEGKDLI 136


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 291 DDALLTAGFQHGDNNSLPLSKSVRNCVPRSPSGI--LRSSRRSP 166
           DD       Q GD +S PLS+SV   VP SP  I   + S +SP
Sbjct: 290 DDGHSATTIQQGDVSSYPLSRSVSTPVPMSPISISPAKPSPQSP 333


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 238 AVEVSTQLCAEVTIRDFEVLTXVTVVSHQGQVAIIRDISQLVVFALHVRYVHVVCGGTDI 59
           AVEV++    +   +DF +L+ V    HQG +  + D  +L V     +Y  +V G   +
Sbjct: 748 AVEVASVDAFQGREKDFIILSCVRSSEHQG-IGFVNDPRRLNVALTRAKYGVIVLGNPKV 806


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 80   NMDVPHVKREDYQLTDISDDGYL 148
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 278 RSASSPSKQTQLSTNKPTQH 337
           +S SSPS+ + LST+KP  H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 98  VKREDYQLTDISDDGYL 148
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 266 NPAVRSASSPSKQTQLSTNKPT 331
           N +++ +S PS++  LS+N+PT
Sbjct: 87  NQSIQGSSLPSEKPYLSSNQPT 108


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  LVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 115
           L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 886 LLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 50  KYEDICPSTHNMDVPHVKRED 112
           K +D CPST   D+ H+ R D
Sbjct: 186 KLQDRCPSTSLKDIDHLFRVD 206


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 12  RFTWLGLISS--MVKSMKISVPPHTTWTY 92
           R TW GL +    V+S+ +++P H +W Y
Sbjct: 261 RGTWFGLQAPEPRVESILMTLPLHASWRY 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,928
Number of Sequences: 5004
Number of extensions: 41257
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)