Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0541
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 101 4e-22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 101 4e-22
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 101 6e-22
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 98 4e-21
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 48 6e-06
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 0.98
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 29 3.0
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 28 5.2
10_05_0096 - 9144683-9145270 28 6.9
12_02_0076 + 13284747-13285434,13285507-13285829 27 9.2
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 9.2
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 101 bits (243), Expect = 4e-22
Identities = 44/80 (55%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 77 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLP 136
Query: 197 -DGDLGTQLRTDFDSGKELL 253
D L Q++T F GK+L+
Sbjct: 137 TDDSLLGQIKTGFGEGKDLV 156
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 101 bits (243), Expect = 4e-22
Identities = 45/80 (56%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P
Sbjct: 1395 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLP 1454
Query: 197 -DGDLGTQLRTDFDSGKELL 253
D L TQ++ F GK+L+
Sbjct: 1455 SDEALLTQIKDGFAEGKDLI 1474
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 101 bits (241), Expect = 6e-22
Identities = 44/81 (54%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 60 HFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 119
Query: 197 -DGDLGTQLRTDF-DSGKELL 253
D L Q++ F + GK+++
Sbjct: 120 TDDTLTNQIKNGFGEEGKDMI 140
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 98.3 bits (234), Expect = 4e-21
Identities = 42/80 (52%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P
Sbjct: 92 HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLP 151
Query: 197 -DGDLGTQLRTDFDSGKELL 253
D +L +Q++ F GK+L+
Sbjct: 152 TDDNLLSQIKDGFGEGKDLV 171
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/55 (40%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Frame = +2
Query: 95 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELL 253
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVV 100
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 86 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 205
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +2
Query: 59 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 229
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 230 FDSGKELLSPC*NP 271
SGKE + NP
Sbjct: 293 AASGKESMPMGMNP 306
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 194 PDGDLGTQLRTDFDSGKELLS 256
PDGDL ++R +SGKEL S
Sbjct: 206 PDGDLKDKMRDAMESGKELTS 226
>10_05_0096 - 9144683-9145270
Length = 195
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 324 LFVESCVCFDGDDALLT-AGFQHGDNNSLPLSKSVR 220
L V +C GD A ++ A HG N+S P+S S+R
Sbjct: 19 LLVYACTATPGDPAYMSFAPVWHGLNSSRPISISIR 54
>12_02_0076 + 13284747-13285434,13285507-13285829
Length = 336
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 525 NASAKWGVRYCE*RQRGGGAPR 460
N + W +YC R++GGGA R
Sbjct: 14 NFAPGWRCKYCHQRKKGGGATR 35
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 56 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED--LKIPDGDLGTQLRTD 229
E+I P+ + MD+ + E Y + I+++ + GD+ + L +P+ +L +
Sbjct: 571 EEIPPNANGMDIDSDREETYNVEGIAENSEDCRVRGGGDIDTECNLSLPEHELPLHQESK 630
Query: 230 FDS 238
DS
Sbjct: 631 SDS 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,056
Number of Sequences: 37544
Number of extensions: 280929
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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