Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0541
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                51   7e-07
SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_34814| Best HMM Match : DUF1685 (HMM E-Value=4.3)                   29   3.1  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 19/46 (41%), Positives = 32/46 (69%)
 Frame = +2

Query: 116 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELL 253
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  +
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFM 688


>SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 353 TFNFLQSTTLT*M*NIIXCINLT*KTNNNTEVVLGDRGAPP-PR*RHSQYLTPHFADAFR 529
           T N +  T +T + N+I  ++ T K N NT +++    APP P   H  Y   H  +   
Sbjct: 56  TTNIIIVTNITIIGNVI--VSNTTKNNTNTIIIITSSSAPPSPSYYHHLYRHYHHINTIT 113

Query: 530 SLALNS 547
           +  +NS
Sbjct: 114 TSLINS 119


>SB_34814| Best HMM Match : DUF1685 (HMM E-Value=4.3)
          Length = 330

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 279 LTAGFQHGDNNSLPLSKSVRNCVPRSPSG 193
           L AG + G  +S+P+   VR+ VPR+P G
Sbjct: 300 LRAGSREGRRSSVPVISPVRDRVPRNPLG 328


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 41  NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 169
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 315 ESCVCFDGDDALLTAGFQHGDNNSLPLSKSVRNCVPRSPSGIL 187
           ++C    GD  LLTAG     + ++ ++  + N V ++P GIL
Sbjct: 345 DACFSCQGDGLLLTAGM----DKTIQITSMLSNTVVQTPGGIL 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,049
Number of Sequences: 59808
Number of extensions: 340764
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)