Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0541
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   142   3e-34
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   140   1e-33
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   140   1e-33
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   140   1e-33
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   140   1e-33

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  142 bits (344), Expect = 3e-34
 Identities = 63/81 (77%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK
Sbjct: 56  KVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLK 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG QLR DFDSGK+LL
Sbjct: 116 VPEGELGEQLRLDFDSGKDLL 136



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 247 IVVTVLKSCGEECVIAVKANTALDK 321
           ++ TVLK+CGEECVIA+K NTALDK
Sbjct: 135 LLCTVLKACGEECVIAIKTNTALDK 159


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  140 bits (340), Expect = 1e-33
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK
Sbjct: 56  KVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLK 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG QLR DFDSGK+LL
Sbjct: 116 VPEGELGEQLRLDFDSGKDLL 136



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 247 IVVTVLKSCGEECVIAVKANTALDK 321
           ++ TVLK+CGEECVIA+K NTALDK
Sbjct: 135 LLCTVLKACGEECVIAIKTNTALDK 159


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  140 bits (340), Expect = 1e-33
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK
Sbjct: 56  KVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLK 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG QLR DFDSGK+LL
Sbjct: 116 VPEGELGEQLRLDFDSGKDLL 136



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 247 IVVTVLKSCGEECVIAVKANTALDK 321
           ++ TVLK+CGEECVIA+K NTALDK
Sbjct: 135 LLCTVLKACGEECVIAIKTNTALDK 159


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  140 bits (340), Expect = 1e-33
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK
Sbjct: 56  KVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLK 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG QLR DFDSGK+LL
Sbjct: 116 VPEGELGEQLRLDFDSGKDLL 136



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 247 IVVTVLKSCGEECVIAVKANTALDK 321
           ++ TVLK+CGEECVIA+K NTALDK
Sbjct: 135 LLCTVLKACGEECVIAIKTNTALDK 159


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  140 bits (340), Expect = 1e-33
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 190
           +VH+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK
Sbjct: 56  KVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLK 115

Query: 191 IPDGDLGTQLRTDFDSGKELL 253
           +P+G+LG QLR DFDSGK+LL
Sbjct: 116 VPEGELGEQLRLDFDSGKDLL 136



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 247 IVVTVLKSCGEECVIAVKANTALDK 321
           ++ TVLK+CGEECVIA+K NTALDK
Sbjct: 135 LLCTVLKACGEECVIAIKTNTALDK 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,388,866
Number of Sequences: 53049
Number of extensions: 479019
Number of successful extensions: 1226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)