Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0541
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    91   8e-19
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    89   2e-18
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 187
           +VH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DL
Sbjct: 59  KVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDL 117

Query: 188 KIPDGDLGTQLRTDFD 235
           K+PD +LG Q+R  ++
Sbjct: 118 KLPDTELGQQIRDAYE 133


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
 Frame = +2

Query: 11  EVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 187
           +VH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DL
Sbjct: 93  KVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDL 151

Query: 188 KIPDGDLGTQLR 223
           K+P+GDLG  +R
Sbjct: 152 KMPEGDLGNTIR 163


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +2

Query: 35  IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 190
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,589
Number of Sequences: 27780
Number of extensions: 239385
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)