Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0541
(625 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 7.4
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 7.4
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 9.8
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 21 9.8
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 21 9.8
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 9.8
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 32 DIFNGKKYEDIC 67
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 249 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 151
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 7.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 255 DNNSLPLSKSVRNCVPRSPSGILRSSRRSPLS 160
D + P S N VP+S +G+ SSRRS ++
Sbjct: 226 DTSDGPESHQNSN-VPKSVAGLNVSSRRSDMN 256
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 7.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 118 LVVFALHVRYVHVVCG 71
LV FAL +R +VCG
Sbjct: 707 LVTFALVLRPTDIVCG 722
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 53 YEDICPSTHNMDV 91
YE PSTH MD+
Sbjct: 46 YERFSPSTHLMDL 58
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 311 AVFALTAMTHSSPQDFSTVTTIPCRCRSQYAT 216
A+F A P+ F V RC S++ T
Sbjct: 20 AIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 311 AVFALTAMTHSSPQDFSTVTTIPCRCRSQYAT 216
A+F A P+ F V RC S++ T
Sbjct: 20 AIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>AF023666-1|AAC14552.1| 363|Apis mellifera
sn-glycerol-3-phosphate dehydrogenase protein.
Length = 363
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 32 DIFNGKKYEDICPSTH 79
+I NGKK +I TH
Sbjct: 44 EIINGKKLTEIINETH 59
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,183
Number of Sequences: 438
Number of extensions: 3161
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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