Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0541
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   106   1e-23
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   103   1e-22
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   101   5e-22
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    32   0.36 
At3g06450.1 68416.m00746 anion exchange family protein similar t...    29   1.9  
At5g47580.1 68418.m05873 expressed protein strong similarity to ...    28   5.8  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   7.7  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    27   7.7  
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu...    27   7.7  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
           H V IDIF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLP 117

Query: 197 DGD-LGTQLRTDFDSGKELL 253
           + D L  Q+++ FD GK+L+
Sbjct: 118 NDDTLLQQIKSGFDDGKDLV 137


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  103 bits (247), Expect = 1e-22
 Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
           H V IDIF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLP 117

Query: 197 -DGDLGTQLRTDFDSGKELL 253
            D  L TQL+  F+ GK+++
Sbjct: 118 TDEALLTQLKNGFEEGKDIV 137


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  101 bits (241), Expect = 5e-22
 Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  HLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP 196
           H V IDIF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P
Sbjct: 58  HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLP 117

Query: 197 -DGDLGTQLRTDFDSGKELL 253
            D  L  Q+R  FD GK+++
Sbjct: 118 TDDGLTAQMRLGFDEGKDIV 137


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +2

Query: 173 LREDLKIPDGDLGTQLRTDFDSGKELLSPC*NPAVRSASSPSKQTQLSTNKP 328
           L +D + PDGDL + +  D +  K+ + P  +  +R  S+P K T L+ ++P
Sbjct: 461 LTQDSQEPDGDLKSLIGPDRNQIKKPVPPIWSEIMRFFSNPHKPTILALSRP 512


>At3g06450.1 68416.m00746 anion exchange family protein similar to
           putative Anion exchanger family members: GB:AAD39673,
           GB:AAD55295 [Arabidopsis thaliana]
          Length = 732

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 497 IASDVSEGEAPRGLRAPPLYYYSFFKLNLYXILC 396
           +AS +++ E    LR PP Y+Y  F L    ILC
Sbjct: 316 VASQLAQQE-DFNLRKPPAYHYDLFLLGFLTILC 348


>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 582 NFRCPLNSVKYYELRARLRNASAKW 508
           NFRCP+   KYY    R+ +    W
Sbjct: 301 NFRCPIRGKKYYRDEFRIESYWTHW 325


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 98  VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 247
           V+R+  +++      Y  L ADN    +   +  G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 312 SCVCFDGDDALLTAGFQHG 256
           +C+ F GDD+LL +G Q G
Sbjct: 124 TCLVFSGDDSLLVSGSQDG 142


>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
           putative similar to mdr-like P-glycoprotein GI:3849833
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF00005: ABC transporter and PF00664: ABC transporter
           transmembrane region; identical to cDNA MDR-like
           p-glycoprotein (At3g28860) GI:24324261
          Length = 1252

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 512 SGG*GIASDVSEGEAPRGLRAPPLYYYSFFKLN 414
           +G  G    +S  E  R  RAP  Y+Y   KLN
Sbjct: 648 TGADGRIEMISNAETDRKTRAPENYFYRLLKLN 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,298
Number of Sequences: 28952
Number of extensions: 219148
Number of successful extensions: 520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)