Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0540
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.8  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   4.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.4  

>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 314 FTILEDTRSDRDLSRIKNILTWWF 243
           F ++ D  SD +L R+  +L WWF
Sbjct: 86  FAVMGD--SDDELERMLGVLRWWF 107


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 468 YKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYIQLSKKNLSKKYFT 322
           YK+ ++    N+ CY       FI RKS KF +K     K+ L++ + T
Sbjct: 30  YKVIIVDNLCNS-CYDAVARVEFIVRKSIKF-FKLDLRDKEGLAQIFDT 76


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 109  C*VFDILIIMYNYAFYNVNKTNCLHVHLFIS 201
            C VF++L  ++NYA Y     N LH+  +I+
Sbjct: 1924 CLVFEVLHAVHNYAIYG----NYLHLEEYIN 1950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,428
Number of Sequences: 5004
Number of extensions: 47273
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)