Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0540
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39776| Best HMM Match : Acetyltransf_1 (HMM E-Value=1e-23)          28   6.6  
SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)                       27   8.7  
SB_42536| Best HMM Match : RVT_1 (HMM E-Value=0.06)                    27   8.7  

>SB_39776| Best HMM Match : Acetyltransf_1 (HMM E-Value=1e-23)
          Length = 237

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = -2

Query: 504 IFFKCXRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYIQLSKKNLSKKY 328
           +FF      A ++ L+++ ++       V  +Y  IY +  KF+   +    +++ K Y
Sbjct: 62  VFFVFAAAVAFQWSLWILAVYLLVCIVLVALLYINIYLQIMKFIGACLSADLRDIDKSY 120


>SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 543 FLWLNNYHYYFNTIFFKCXRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKY 364
           ++W  N HYYF+T+     R AA               C + T+  ++I+R+  K ++ Y
Sbjct: 486 YIW--NGHYYFDTVLTMGLRSAA-------------QACQRATSAVAWIHRQQGKVLFNY 530

Query: 363 I 361
           +
Sbjct: 531 L 531


>SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)
          Length = 263

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 223 IYKNAYIMK*ISVHVNNLFYLHCKKHSCT*LLKYRKLNNIYT 98
           I +NA ++    + VN     HC  HSC  LL   K+  IY+
Sbjct: 99  IQQNANLLSLCYIPVNCFIICHCLLHSCDHLLPV-KITEIYS 139


>SB_42536| Best HMM Match : RVT_1 (HMM E-Value=0.06)
          Length = 353

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 543 FLWLNNYHYYFNTIFFKCXRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKY 364
           ++W  N HYYF+T+     R AA               C + T+  ++I+R+  K ++ Y
Sbjct: 222 YIW--NGHYYFDTVLTMGLRSAA-------------QACQRATSAVAWIHRQQGKVLFNY 266

Query: 363 I 361
           +
Sbjct: 267 L 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,646
Number of Sequences: 59808
Number of extensions: 278754
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)