Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0540
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

K01664-1|AAA28872.1|   81|Drosophila melanogaster protein ( D.me...    29   6.3  

>K01664-1|AAA28872.1|   81|Drosophila melanogaster protein (
           D.melanogaster Bkm-likeDNA (proximal region X
           chromosome) 5' end, clone CS319.).
          Length = 81

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 89  LILSIYV-VKFSIF**LCTTMLFTM*IKQIVYMYTYLFHYISIFINYHIS 235
           + LSIY+ +  SI+  LC  +  ++ I   +Y+  YL  Y+SI+++ ++S
Sbjct: 29  IYLSIYLSIYLSIY--LCIYLSISLSIYLSIYLSIYLSIYLSIYLSLYLS 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,667,524
Number of Sequences: 53049
Number of extensions: 402637
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)