Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0540
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    28   5.8  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    27   7.7  

>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +1

Query: 28  LMYVIKM*NLLSIYIVINSLFNFKYICC*VFDILIIMYNYAFYNVNKTNCLHVHLFISLY 207
           ++Y++ +   +SIY+V   +  ++Y     F IL ++Y    + +   + L   L   + 
Sbjct: 122 ILYIVHVLKEISIYVVTRRILKYQYKIYNPFSILGLVYGIIIFCMAIFSVLSALLHFPIV 181

Query: 208 KHFYKLSY 231
           K    L+Y
Sbjct: 182 KKIRALTY 189


>AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical
           protein T10B11.8 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 200 HYISIFINYHISNNRTTTLIYFLFEINLYRNVCPLEL*INCVK 328
           HY + F NY + N +TT+  +    +N+ R + PL+   N +K
Sbjct: 346 HYTNSFDNYRMGNEQTTSYDHHPIPVNV-RRLYPLQSHKNIIK 387


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 143 TMLFTM*IKQIVYMYTYLFHYISIFINYHISNNRTTTLIYFLFEINL 283
           + LFT   + + Y+  YL H  SIF++  ++      LIYF F +++
Sbjct: 12  SFLFT---QAVFYLNFYLLH--SIFVSKKLAKKPDLVLIYFRFSVDM 53


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164 IKQIVYMYTYLFHYISIFI-NYHISNNRTTTLIYFLFEINLYRNVCPLEL*INCVKYF 334
           +K +V  Y++L    S  I N H+    T  +I+ LF  N ++++  L    NCV+ F
Sbjct: 222 LKSVVQPYSHLESPPSGLISNTHLLILCTHKMIFLLFSPNFHQSIFMLSTQNNCVEKF 279


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 378 FVYKYIQLSKKNLSKKYF 325
           FVY+Y+ + + N +KKYF
Sbjct: 110 FVYRYLVIHESNFTKKYF 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,060
Number of Sequences: 27780
Number of extensions: 251900
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)