Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E5Q5 Cluster: Chromosome undetermined scaffold_8, who...    34   3.0  
UniRef50_UPI00006CC974 Cluster: hypothetical protein TTHERM_0034...    32   9.2  
UniRef50_A2ETV5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_A0E5Q5 Cluster: Chromosome undetermined scaffold_8, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_8,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 415

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = -3

Query: 530 DFISNS--AYLSNKLFSFCKFSMPIIGHVNNIV*LYLTIFFEDSKLFY*FKLDSGDKLTY 357
           +FI NS  +Y+S+++ + C F+M  I  +NNI  + +  FF  SK+      +  +KL +
Sbjct: 185 NFILNSLSSYVSDEIKNQCGFTMNEINCLNNIKLIKIPAFFITSKIDSIVSHEQTEKL-F 243

Query: 356 NRYSGL 339
           N Y G+
Sbjct: 244 NHYQGI 249


>UniRef50_UPI00006CC974 Cluster: hypothetical protein TTHERM_00346680;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00346680 - Tetrahymena thermophila SB210
          Length = 2189

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 594  WLLSISAQIVIISSTQLQYQKRFHF-KLSIFIKQTI*LLQIQYAN 463
            W+ S+++Q+V +S  ++Q   RF+F KL     QT+ ++QI   N
Sbjct: 1284 WVASLNSQVVCLSKNKIQELSRFNFVKLMSNNSQTLGVIQIDELN 1328


>UniRef50_A2ETV5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1266

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -3

Query: 416 FEDSKLFY*FKLDSGDKLT--YNRYSGLFN*MFN-SVPIFNVYYDTNYNSLIIENNSTV 249
           FE SKL +    D+GD L   Y+ YS L   +F+  VP+F  Y+    + LII +N  V
Sbjct: 451 FEPSKLVFFCFADTGDLLVYDYDDYSPLTRILFDQKVPLFIYYHYGTGSLLIIYHNEVV 509


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,102,421
Number of Sequences: 1657284
Number of extensions: 9355697
Number of successful extensions: 19229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19225
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)