Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.53 
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    29   0.53 

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 320 SVPIFNVYYDTNYNSLIIENNSTVNI*KKVS**AKLGMVLAMIEL 186
           +V I  V    N N L  +NN  +++ K +S   +LG  LA +EL
Sbjct: 202 NVSIAPVISSENLNELHFKNNGVISVEKSISHFPQLGTQLARVEL 246


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 248 SQWSCFQLLMNCS*CHNRH*KW 313
           + WS + LL NCS C N +  W
Sbjct: 343 TSWSAYSLLKNCSDCANSYKNW 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,559
Number of Sequences: 5004
Number of extensions: 44115
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)