Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 27   HNGLP*WAFPEHPLIYFNIPL 89
            H+ L  WA+PEHPL+   +PL
Sbjct: 1495 HDMLKEWAYPEHPLVRVRLPL 1515


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 359 YNRYSGLFN*MFNSVPIFNVYYDTNYNSLIIENNSTVN 246
           YN Y+  +N  +N+   +N  Y+T YN+   E N+  N
Sbjct: 261 YNEYNNDYNTEYNNE--YNTEYNTEYNTEYTEYNTEYN 296


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 16  YISLTMDCLNGHSPNTP*FTLISHLLIFNF*ISLICLMTIQCYYLISVLLKCRC 177
           ++++T+ C++        +  I HL I    I L     I+CYY++ V +   C
Sbjct: 434 HLAITISCISLLLYRASRYYYIVHLAITMSCILLSLYRAIRCYYVVHVAITISC 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,649
Number of Sequences: 59808
Number of extensions: 293981
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)