Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81056-4|CAB02900.1|  145|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 590 FCPFRLRLSSFHQHNYNIRRDF 525
           +  F + LS+ H+HNY + +DF
Sbjct: 105 YSEFPISLSALHKHNYELNQDF 126


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
            R08E3.1b protein.
          Length = 1465

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 418  KIVRYSHTILLTCPIIGILNLQKLNSLFDKYAEFEMKSLLI 540
            K   YSH I+LT  + G L L   + LF+ + ++  +S+++
Sbjct: 1118 KTFGYSHYIMLTNNLNGSLQLNNGSLLFEDFQQYSDESMIM 1158


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
            R08E3.1a protein.
          Length = 1512

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 418  KIVRYSHTILLTCPIIGILNLQKLNSLFDKYAEFEMKSLLI 540
            K   YSH I+LT  + G L L   + LF+ + ++  +S+++
Sbjct: 1118 KTFGYSHYIMLTNNLNGSLQLNNGSLLFEDFQQYSDESMIM 1158


>Z81056-4|CAB02900.1|  145|Caenorhabditis elegans Hypothetical
           protein F09F3.6 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 353 RYSGLFN*MFNSVPIFNVYYDTNYNSLIIENNSTVNI 243
           R +G +  +F   P  N+Y+  NYN L      T+NI
Sbjct: 75  RVAGTYTKIFTLDPKVNIYHQCNYNGL-CSKKLTINI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,944,997
Number of Sequences: 27780
Number of extensions: 243676
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)