Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 533 RDFISNSAYLSNKLFSFCKFSMPIIGHVNN 444
           +D  S SA    KL+ FC +   II    N
Sbjct: 29  KDITSTSALYRLKLYLFCDYDRDIIPEQKN 58


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 590 FCPFRLRLSSFHQHNYNIRRDFISNSAY 507
           FCP  LRL+S   +    +  F+ ++ Y
Sbjct: 311 FCPPNLRLTSERGYEQESKVQFVVDAVY 338


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 590 FCPFRLRLSSFHQHNYNIRRDFISNSAY 507
           FCP  LRL+S   +    +  F+ ++ Y
Sbjct: 401 FCPPNLRLTSERGYEQESKVQFVVDAVY 428


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 420 NSEVQSYYIINMPNNWHTEFAK 485
           ++ + S YI+N    WH  +++
Sbjct: 335 SAAIDSGYILNNDGKWHNIYSE 356


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 420 NSEVQSYYIINMPNNWHTEFAK 485
           ++ + S YI+N    WH  +++
Sbjct: 335 SAAIDSGYILNNDGKWHNIYSE 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,287
Number of Sequences: 438
Number of extensions: 2933
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)