Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0539
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autopha...    30   1.4  
At4g20780.1 68417.m03017 calcium-binding protein, putative simil...    29   2.4  
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    27   7.3  
At3g60670.1 68416.m06788 zinc-binding protein, putative similar ...    27   9.6  

>At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autophagy
           9 protein GI:19912149 from [Arabidopsis thaliana]
          Length = 866

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 569 LSSFHQHNYNIRRDFISNSAYLSNKLF 489
           L S    N+ +RRDF+SN   L  +LF
Sbjct: 295 LQSMFDCNFRVRRDFVSNPTTLKKRLF 321


>At4g20780.1 68417.m03017 calcium-binding protein, putative similar
           to SP|Q09011 Calcium-binding protein CAST {Solanum
           tuberosum}; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 191

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 415 KKIVRYSHTILLTCPIIGILNLQKLNSLFDK 507
           KK+ R S +  L  P +  L LQ++  LFDK
Sbjct: 9   KKVARQSSSFRLRSPSLNALRLQRIFDLFDK 39


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 353 RYSGLFN*MFNSVPIFNVYYDTNYNSLIIENNSTVNI*KK 234
           RY+G++   FN++P+  V +  N NS I +++  V+I K+
Sbjct: 57  RYAGIW---FNNIPVQTVVWVANSNSPINDSSGMVSISKE 93


>At3g60670.1 68416.m06788 zinc-binding protein, putative similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 245

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 353 CCKSVCPHCL 382
           CC ++CPHCL
Sbjct: 40  CCLTICPHCL 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,745,027
Number of Sequences: 28952
Number of extensions: 208894
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)