Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0538
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 153 1e-37
03_01_0547 + 4093196-4093657,4094267-4095148 153 1e-37
03_01_0544 + 4082528-4082989,4083585-4084466 153 1e-37
03_01_0543 + 4076981-4077442,4078145-4079026 153 1e-37
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 3e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 47 1e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 47 1e-05
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 40 0.002
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.006
02_04_0462 + 23131433-23132836 34 0.078
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 31 0.96
11_06_0516 + 24502645-24504507 29 2.9
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 6.8
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 27 8.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 8.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 153 bits (370), Expect = 1e-37
Identities = 67/85 (78%), Positives = 78/85 (91%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KFAE
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 115 bits (276), Expect = 3e-26
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 153 bits (370), Expect = 1e-37
Identities = 67/85 (78%), Positives = 78/85 (91%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KFAE
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 115 bits (276), Expect = 3e-26
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 153 bits (370), Expect = 1e-37
Identities = 67/85 (78%), Positives = 78/85 (91%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KFAE
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 115 bits (276), Expect = 3e-26
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 153 bits (370), Expect = 1e-37
Identities = 67/85 (78%), Positives = 78/85 (91%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KFAE
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 115 bits (276), Expect = 3e-26
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = +1
Query: 253 RIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 432
+I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+
Sbjct: 583 KILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTI 642
Query: 433 AVGVIKAV 456
AVG++ V
Sbjct: 643 AVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 226 HCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 405
H ++ +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 406 AVRDMRQTVAVGVI 447
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 226 HCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 405
H ++ +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 406 AVRDMRQTVAVGVI 447
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 5 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN-- 178
SV + ++ A PG+NV + + ++ G+V K NP ++F AQ+ +L
Sbjct: 226 SVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELL 284
Query: 179 HPGQISNGYTPVLDCHTAHIACKFAE 256
+ GY VL H+ C+ E
Sbjct: 285 DNAIFTAGYKAVLHIHSVVEECEIVE 310
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 259 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 414
K++ D + K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 365 KKEADPKK-KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>02_04_0462 + 23131433-23132836
Length = 467
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ + G
Sbjct: 327 VEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKDEGG 386
Query: 188 QIS---NGYTPVLDCHTAHI 238
+ S GY P T +
Sbjct: 387 RHSPFFPGYRPQFYMRTTDV 406
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 30.7 bits (66), Expect = 0.96
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL---- 175
VEM + L GDNVG ++ + +++RG V K K F A++ VL
Sbjct: 318 VEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYVLTKDE 375
Query: 176 --NHPGQISNGYTPVLDCHTAHIACK 247
H +SN Y+P TA + K
Sbjct: 376 GGRHTAFLSN-YSPQFYFRTADVTGK 400
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 188 QISNG 202
+I G
Sbjct: 170 EIRRG 174
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 452 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 273
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 28 SPRSCTWRQCRFQRKERVRQGIASWLCCW*LQKQPT 135
+P TW + Q +R WLC W Q++PT
Sbjct: 217 TPNQRTWAE-GLQLAASIRFQFPQWLCSWDPQRRPT 251
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 449 LMTPTATVCLMSRTAKRPRGGNSWKDST 366
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,769
Number of Sequences: 37544
Number of extensions: 378716
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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