Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0538
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 150 8e-37
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 49 3e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 30 1.3
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.3
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.0
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.2
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 6.9
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 6.9
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 6.9
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 6.9
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 6.9
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 6.9
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 150 bits (364), Expect = 8e-37
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NH
Sbjct: 149 KSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNH 208
Query: 182 PGQISNGYTPVLDCHTAHIACKF 250
PG+I GY+PVLDCHTAHIACKF
Sbjct: 209 PGEIHAGYSPVLDCHTAHIACKF 231
Score = 131 bits (316), Expect = 5e-31
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = +1
Query: 253 RIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 432
++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTV
Sbjct: 233 KLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTV 292
Query: 433 AVGVIKAVNFKEAGGGKVTKAAEKATRAR 519
AVGVIK+V+ EA GGK TKAA K + +
Sbjct: 293 AVGVIKSVDKTEAAGGKTTKAATKVIKGK 321
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 253 RIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 417
R+ +D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 491 RLIALIDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 331 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 447
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 226 HCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 360
HC + I + E D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 68 HCIYLFHIAKKLEVKDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 208 TSLGLPHCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 387
T + H Q I R TG++TE+N ++ SG+ I +V + C+ Q +
Sbjct: 242 TEINALHSGEPGQTTEINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLY 299
Query: 388 PP 393
P
Sbjct: 300 GP 301
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 458 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 360
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 323 PDLMDFGLTSVDLPVRRSTFSLILQICRQCGQCG 222
PD DF L +D+P +R + L + CG CG
Sbjct: 1137 PDCGDFNLQLMDIPTKRKGCASYLHLL--CGNCG 1168
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 443 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 348
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 337 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 426
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,573,762
Number of Sequences: 59808
Number of extensions: 425402
Number of successful extensions: 1227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -