Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0538
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 151 5e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 151 5e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 151 5e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.017
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 29 3.5
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 29 3.5
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 29 3.5
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 6.1
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 6.1
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 27 8.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 151 bits (365), Expect = 5e-37
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 256 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 315
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQISNGYTPVLDCHTAHIACKF E
Sbjct: 316 PGQISNGYTPVLDCHTAHIACKFNE 340
Score = 125 bits (302), Expect = 2e-29
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +1
Query: 256 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 435
+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 341 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 400
Query: 436 VGVIKAVNFKEAGGGKVTKAAEKA 507
VGVIK+V + GKVTK+A+KA
Sbjct: 401 VGVIKSVEKSDGSSGKVTKSAQKA 424
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 151 bits (365), Expect = 5e-37
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQISNGYTPVLDCHTAHIACKF E
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNE 374
Score = 125 bits (302), Expect = 2e-29
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +1
Query: 256 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 435
+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 375 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 434
Query: 436 VGVIKAVNFKEAGGGKVTKAAEKA 507
VGVIK+V + GKVTK+A+KA
Sbjct: 435 VGVIKSVEKSDGSSGKVTKSAQKA 458
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 151 bits (365), Expect = 5e-37
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQISNGYTPVLDCHTAHIACKF E
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNE 374
Score = 125 bits (302), Expect = 2e-29
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +1
Query: 256 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 435
+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 375 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 434
Query: 436 VGVIKAVNFKEAGGGKVTKAAEKA 507
VGVIK+V + GKVTK+A+KA
Sbjct: 435 VGVIKSVEKSDGSSGKVTKSAQKA 458
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 268 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 444
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 445 IKAV 456
+K V
Sbjct: 528 LKVV 531
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +2
Query: 32 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 211
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 212 VLDCHTA 232
VL +A
Sbjct: 451 VLHIQSA 457
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 268 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 447
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585
Query: 448 KAV 456
+ V
Sbjct: 586 EKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 268 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 447
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603
Query: 448 KAV 456
+ V
Sbjct: 604 EKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 303 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 359
Query: 188 QISNGYTPVLDCHTAHI 238
TP+ + + H+
Sbjct: 360 SEGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 304 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 360
Query: 188 QISNGYTPVLDCHTAHI 238
TP+ + + H+
Sbjct: 361 SEGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 304 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 360
Query: 188 QISNGYTPVLDCHTAHI 238
TP+ + + H+
Sbjct: 361 SEGGAKTPIANYFSEHV 377
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 5 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 452 SIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 165 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 34
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 432 NCLPHVTDSKTTEGWEFLEGLY-T*RLGRYQVDNGCISRLDGFWVDFSRFTSTTVNFFFD 256
N LP+ KT +G L GLY + R R Q + S + F +FS + + F
Sbjct: 1941 NTLPNALPEKTHDGMAVLSGLYQSLRTNRQQRRSFLQSMVKLFSEEFSHDKPQLMEYIFI 2000
Query: 255 SANL 244
+ NL
Sbjct: 2001 ADNL 2004
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,791
Number of Sequences: 27780
Number of extensions: 313530
Number of successful extensions: 911
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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