Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0538
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 151 4e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 151 4e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 151 4e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 151 4e-37
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 96 2e-20
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 54 1e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 49 2e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 35 0.049
At4g27900.2 68417.m04005 expressed protein 32 0.35
At4g27900.1 68417.m04004 expressed protein 32 0.35
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 31 0.46
At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr... 27 7.5
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 9.9
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 27 9.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 151 bits (366), Expect = 4e-37
Identities = 65/85 (76%), Positives = 79/85 (92%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NH
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KF+E
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 115 bits (277), Expect = 2e-26
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (366), Expect = 4e-37
Identities = 65/85 (76%), Positives = 79/85 (92%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NH
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KF+E
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 115 bits (277), Expect = 2e-26
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (366), Expect = 4e-37
Identities = 65/85 (76%), Positives = 79/85 (92%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NH
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KF+E
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 115 bits (277), Expect = 2e-26
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (366), Expect = 4e-37
Identities = 65/85 (76%), Positives = 79/85 (92%)
Frame = +2
Query: 2 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 181
KSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NH
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNH 337
Query: 182 PGQISNGYTPVLDCHTAHIACKFAE 256
PGQI NGY PVLDCHT+HIA KF+E
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 115 bits (277), Expect = 2e-26
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 504
FAVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +1
Query: 226 HCPH-CLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 402
H H ++ I K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGR
Sbjct: 18 HTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGR 77
Query: 403 FAVRDMRQTVAVGVIKAVNFKEAGGGK 483
FA+RDMRQTV VGVIK+V K+ G K
Sbjct: 78 FAIRDMRQTVGVGVIKSVVKKDPSGAK 104
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 173 LNHPGQISNGYTPVLDCHTAHIACKFAE 256
+NH GQI NGYTPVLDCHT+HIA KF+E
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSE 28
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +1
Query: 244 QICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 423
+I +K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 455 EIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEG 514
Query: 424 QTVAVGVI 447
+T+AVG +
Sbjct: 515 KTIAVGKV 522
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 23 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQIS 196
+ ++ A PG+N+ + + +++ G+V S NP +F AQ+ +L +
Sbjct: 380 DKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFVAQLQILELLDNAIFT 438
Query: 197 NGYTPVLDCHTAHIACKFAE 256
GY +L H C+ E
Sbjct: 439 AGYKAILHIHAVVEECEIIE 458
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +1
Query: 226 HCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 405
H + ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646
Query: 406 AVRDMRQTVAVGVIKAV 456
+R +TVA+G + +
Sbjct: 647 FLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 187
VEM + L EA+ GDNVG ++ + +++RG V + P + V+ G
Sbjct: 336 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGG 395
Query: 188 QIS---NGYTPVLDCHTAHIACK 247
+ S GY P T + K
Sbjct: 396 RHSPFFAGYRPQFYMRTTDVTGK 418
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.35
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 304 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 396
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.35
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 304 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 396
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 31.5 bits (68), Expect = 0.46
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +2
Query: 8 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL---- 175
VEM + L GDNVG ++ + ++++RG V +K K F A++ VL
Sbjct: 319 VEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLTKDE 376
Query: 176 --NHPGQISNGYTPVLDCHTAHIACK 247
H SN Y P TA I K
Sbjct: 377 GGRHTAFFSN-YRPQFYLRTADITGK 401
>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
protein, putative similar to iron-sulfur cluster
assembly complex ISCU1 (GI:11545705) [Homo sapiens];
nifU protein homolog YPL135w (GI:15619823)
[Saccharomyces cerevisiae] PIR2:S69049
Length = 167
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 217 GLPHCPHCLQICRIKEKVDRRTGKSTEVNPKSIKSGDA 330
GL P C + +++ KVD +TG+ + K+ G A
Sbjct: 56 GLVGAPACGDVMKLQIKVDEKTGQIVDARFKTFGCGSA 93
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 286 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 459
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 239 QCGQCGNPRLVCNRLRFDQDG 177
+CG+ G P L+C + RF G
Sbjct: 524 KCGEMGEPALLCEQCRFTVQG 544
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,629
Number of Sequences: 28952
Number of extensions: 292355
Number of successful extensions: 835
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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