Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0537
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043...    29   2.4  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    28   5.6  

>01_05_0315 +
           20803035-20803154,20803235-20804089,20804171-20804350,
           20805191-20805286,20805895-20806179
          Length = 511

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 480 TIRYGVEEVTVADISQEESNRNIILHEPNQXXKSA 376
           T R G  ++T ADI ++   R++I+H P    K A
Sbjct: 410 TGRQGQRQMTCADICEDPPARDVIIHRPYYNLKRA 444


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 294 PLTSFRMGRMMTSRSIYLCSRSKQNYMIHFSHI 196
           P+T    GR  + RSI++C R +  +++ FS +
Sbjct: 120 PITPVLRGRPSSKRSIHICGRPRWLFVLLFSAV 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,231
Number of Sequences: 37544
Number of extensions: 187735
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)