Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0537
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    29   1.7  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    27   8.9  

>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 404 CSIIFRLLSSWLISATVTSSTPYLIVTVHSYEV 502
           CSII+ LLS+WL + T   +   L    H Y++
Sbjct: 165 CSIIYMLLSTWLFNETGRRTATNLGQRSHEYKI 197


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 195 KYVRSESYNSV*IESTNILNVMSSFYPS*NSLMESVWKYE*NITSNTPS 341
           KY  + SYNS  I STN +N +        +  ++  K    +T NTP+
Sbjct: 561 KYTNNNSYNSTAIRSTNAVNRVPQTSLGNYTQTQNSEKSSAAVTFNTPT 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,198
Number of Sequences: 27780
Number of extensions: 195492
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)