Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0537
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 189 QVKYVRSESYNSV*IESTNILNVMSSFYPS*NSLMESV 302
           +V  VR+E+Y ++   S +  N +   YP     MESV
Sbjct: 531 RVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESV 568


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 189 QVKYVRSESYNSV*IESTNILNVMSSFYPS*NSLMESV 302
           +V  VR+E+Y ++   S +  N +   YP     MESV
Sbjct: 499 RVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESV 536


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 534 PT*FRNKXGKLTSYECTVTIRYGVEEVTVADISQEESNRNIILHEPNQ 391
           P   R K  K+ + +  + +R+   E         + N NII+ EP +
Sbjct: 330 PDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTE 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,363
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)