Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0537
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein ...    32   0.29 
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    27   8.3  

>At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501
          Length = 562

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 545 YHWYLPSLGIXPVS*PHTSAL*QLDMGLKRSP*PILAKKRVIEI*YYTNPTNXXN 381
           YH   PSL + P+  P ++A   L + LK SP P  A K +  + Y  N ++  N
Sbjct: 24  YHSLRPSLSLPPIDQPLSAAEFALSLLLKSSP-PATAGKNIEALTYLVNSSSGDN 77


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 213 IHFSHI*LVTVHQLCLTYLFFNY 145
           +HF  I LVTV   CL Y  F Y
Sbjct: 73  VHFGAIYLVTVFVCCLLYFEFRY 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,219
Number of Sequences: 28952
Number of extensions: 171117
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)