Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0536
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    30   0.23 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.6  
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    25   6.6  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.6  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.6  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.8  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   8.8  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 301 VVSAFLNYVSEDVSRSPTNSRAFPSNGSPGGPFSLSASSYN 179
           V S+F+N    DVS +P  SR  P+ GS  G + ++    N
Sbjct: 642 VDSSFINMTPPDVSHAPLISRIIPNKGSIMGGYEVTILGAN 682


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 264 TSSET*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNTVSSNHGS 443
           TSS + F  ++TTI++    S      SS  +IL++  SS   T  SI   +T S+   +
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606

Query: 444 ETVFLSVLVKN-GGLIVNLSPPHPS 515
            T   S +  +       LS P PS
Sbjct: 607 STSSPSSISSSISSSSTILSSPTPS 631


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 57  SYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELADKLN 206
           S +N  NV   +T S I LF+  +    +  + +W+   R L  L D+L+
Sbjct: 252 SLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLH 301


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 266 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 427
           + ++++ K+    +E+ V+ +    +L+      DVE + S  +YID  E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  QHELYKRRKCSAYKHVFCDQPLLCVTC 130
           Q ELY R + S Y HV  D   +  +C
Sbjct: 111 QTELYPRSQISVYLHVLQDDGAVMASC 137


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 408 KLRNTVSSNHGSETVFLSVLVKNGGL 485
           K+++ ++S HG  TV  S+L+ N G+
Sbjct: 55  KVKDYIAS-HGGHTVITSILIANNGI 79


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 369 TWKSS*VVTFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSPPHPS 515
           T+ SS  V +  +    + +++H S T F+      GGL  NLS P  S
Sbjct: 96  TFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGL-NNLSSPSSS 143


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 186 HTTAALTFASRRTRGLRPAQVTHRR 112
           HT AA+  A    RG R   V HR+
Sbjct: 42  HTAAAVKEAFSENRGFRTCHVCHRK 66


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -1

Query: 484 RPPFLTSTDKKTVSEPWFEETV--FLSFIDVNVTTQDDFHVARIVQKD 347
           RPPF+T  D  T    W    +  F+S I  NV T    H     Q+D
Sbjct: 225 RPPFITQCDTATGDNYWAGTYMGDFVSNI-TNVLTNSTGHYCTTQQED 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,479
Number of Sequences: 5004
Number of extensions: 46898
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)