Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0535
         (619 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.4  
UniRef50_Q6BXL3 Cluster: Similar to CA4322|IPF2097 Candida albic...    34   2.4  
UniRef50_P25258 Cluster: Type II restriction enzyme HgiCI; n=2; ...    34   3.1  
UniRef50_Q8IKR8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q8ID76 Cluster: Putative uncharacterized protein MAL13P...    32   9.5  
UniRef50_Q8I3L6 Cluster: Putative uncharacterized protein PFE124...    32   9.5  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 482 WYLPARTHKTSYHQ 441
           WYLPARTHK SYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q6BXL3 Cluster: Similar to CA4322|IPF2097 Candida albicans
           IPF2097 unknown function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA4322|IPF2097 Candida albicans
           IPF2097 unknown function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 909

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 106 LIAKSDLFQTSV*FTEKTVKYKNTAGMLRCTIDNTLLYKIYTY----IINKYFYYSYI 267
           L+ KS     +  FT   +KY +T G+L  ++ + +L+    Y    II+ YFYY YI
Sbjct: 204 LLVKSRKSSLTPEFTMHLLKYYDTKGLLSLSVFDDILFVSKRYPKAEIIDDYFYYKYI 261


>UniRef50_P25258 Cluster: Type II restriction enzyme HgiCI; n=2;
           Bacteria|Rep: Type II restriction enzyme HgiCI -
           Herpetosiphon aurantiacus (Herpetosiphon giganteus)
          Length = 345

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 157 TVKYKNTAGMLRCTIDNTLLYK---IYTYIINKYFYYSYISN 273
           T +  N AG+ +C I  T+L K   IYTYI  KY Y S I+N
Sbjct: 162 TTEQFNLAGLEKCEI-GTILGKNEIIYTYITQKYLYVSRITN 202


>UniRef50_Q8IKR8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 462

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 217 YKIYTYIINKYFYYSYISNTFFFNYEP 297
           Y +Y YI  KYF+  Y  N  FFN  P
Sbjct: 323 YILYKYINRKYFHIQYSQNNSFFNLNP 349


>UniRef50_Q8ID76 Cluster: Putative uncharacterized protein
           MAL13P1.317; n=1; Plasmodium falciparum 3D7|Rep:
           Putative uncharacterized protein MAL13P1.317 -
           Plasmodium falciparum (isolate 3D7)
          Length = 1173

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +1

Query: 22  CKNFTLTRLKKFHFKKQSKSTYI---CT--IGGLIAKSDLFQTSV*FTEKTVKYKNTAGM 186
           C  F +  +K  +F    K ++I   CT  +  ++ K   F+TSV      +K  +   +
Sbjct: 322 CALFKIREIKYINFFINLKKSFILVKCTTRLYNIMIKKRYFKTSV------LKIGSCRNI 375

Query: 187 LRCTIDNTLLYKIYTYIINKYFYYSYISNTFFFNY 291
            R TI+N L YK   +I+NKY      +  FF +Y
Sbjct: 376 KR-TINNILFYKRNIHILNKYVDIKSDNKQFFASY 409


>UniRef50_Q8I3L6 Cluster: Putative uncharacterized protein PFE1240w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE1240w - Plasmodium falciparum
           (isolate 3D7)
          Length = 988

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 KYKNTAGMLRCTIDNTLLYKIYTYII--NKYFYYSYISNTFFFNYEPL 300
           K+KN  G   CTIDN  + KIY  +I  N + YYS+   T  +N   L
Sbjct: 193 KFKNYVG---CTIDNKNIGKIYFNLIDGNNHDYYSFFDCTENYNLNVL 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,945,492
Number of Sequences: 1657284
Number of extensions: 8073065
Number of successful extensions: 20016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19947
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)