Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0535
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   6.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   6.1  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   6.1  
Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 160 VKYKNTAGMLRCTIDNTLLYKIYTYIIN--KYFYYSYISNTFFFNYEP 297
           VK+KNT  ++R   D T+L  +Y  ++   KY   ++  + +FFN  P
Sbjct: 97  VKHKNTLKLIR---DTTILQLVYRNLVTLLKYKINTFNLSYWFFNNNP 141


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 587 HFEI*ILRSRYSYNGLPPPLRTETRYSSRQ 498
           H EI +   R+ YN +PP  R +  Y++R+
Sbjct: 262 HDEILLKSIRHVYNAMPPTFRRDWEYAARK 291


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 587 HFEI*ILRSRYSYNGLPPPLRTETRYSSRQ 498
           H EI +   R+ YN +PP  R +  Y++R+
Sbjct: 262 HDEILLKSIRHVYNAMPPTFRRDWEYAARK 291


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 145 FTEKTVKYKNTAGMLRCTIDNTLLYKIYTYII------NKYFYYSYISNTFFF 285
           FTEK+ K+ N   +L       L+Y +   ++      ++Y +Y +IS+  FF
Sbjct: 31  FTEKSTKFGNYKYLLLYFASFNLVYSVANVVVPIDIHSHRYCFYLFISDGLFF 83


>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 184 MLRCTIDNTLLYKIYTYIINKYFYYSYISNTFFFNYEPLLSE 309
           M R +++N+L   I +++++     +YI N F+  +EP LS+
Sbjct: 205 MNRKSLENSLF--INSFVVSLLLTTNYIYNHFYLMFEPTLSQ 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,578
Number of Sequences: 27780
Number of extensions: 204259
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)