Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0535
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/46 (19%), Positives = 27/46 (58%)
 Frame = +1

Query: 154 KTVKYKNTAGMLRCTIDNTLLYKIYTYIINKYFYYSYISNTFFFNY 291
           +T +Y + + + R +    +++ ++   IN +++++Y+S +   NY
Sbjct: 413 RTPRYNSVSKIDRAS---RIVFPLFFLAINVFYWFAYLSRSERINY 455


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +1

Query: 151 EKTVKYKNTAGMLRCTIDNTLLYKIYTYIINKYFYYSYISNTFFFNYEPL 300
           ++T + ++    +  ++ N   Y  Y    N Y  Y+  +N +  NY+ L
Sbjct: 302 DRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKL 351


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 211 LLYKIYTYIINKYFYYSYISNTFFFN 288
           ++Y I TY+   ++Y S   N   +N
Sbjct: 324 IIYTILTYMSGVFYYLSTTVNPLLYN 349


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 245 LFIIYVYILYNNVLSMVHRNIPAVFLYFTVF 153
           LF    +I+Y+++ S     I  VFLY+ +F
Sbjct: 337 LFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 169 KNTAGMLRCTIDNTLLYKIY 228
           K ++ +L+C IDN L+ KI+
Sbjct: 113 KKSSKLLQCFIDNNLM-KIF 131


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 245 LFIIYVYILYNNVLSMVHRNIPA 177
           L ++YVY   + V++  HRN+ A
Sbjct: 212 LVMLYVYGRISCVIASRHRNLEA 234


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 545 RCNYTEILEFISQSGW 592
           RCN T    +I   GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,773
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)