Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0535
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23540.1 68417.m03392 expressed protein probable membrane pro...    29   2.5  
At5g10920.1 68418.m01267 argininosuccinate lyase, putative / arg...    27   10.0 
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    27   10.0 

>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
 Frame = +1

Query: 7   E*RYICKNFTLTRLKK-FHFKKQSKSTYICTIGGLIAKSDLFQT-----SV*FTEKTVKY 168
           E + I +    T L++ FH+ K++ +  +  +    + ++L QT     +V  TE +  +
Sbjct: 162 EAKAISEEDATTELERGFHYSKKASTKNMKALAS--SSTELLQTLVDVFTVSGTEISADF 219

Query: 169 KNTAGMLRCTIDNTLLYKIYTYIINKY 249
           K   G L  T+D+++  KI   ++NK+
Sbjct: 220 KAAIGCLASTLDSSVRKKILISLLNKF 246


>At5g10920.1 68418.m01267 argininosuccinate lyase, putative /
           arginosuccinase, putative similar to argininosuccinate
           lyase [Nostoc punctiforme] GI:7672743; contains Pfam
           profile PF00206: Lyase
          Length = 517

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +1

Query: 19  ICKNFTLTRLKKFHFKKQSKSTYICTIGGLIAKSDLFQTSV*FTEKTVKYKNTAGMLRCT 198
           +CK   L   + F   K+       TI G+I  S  F  +V F E  +K    AG L  T
Sbjct: 365 LCKGLPLAYNRDFQEDKEPMFDSTKTIMGMIDVSAEFAQNVTFNEDRIKKSLPAGHLDAT 424


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 221 LYNNVLSMVHRNIPAVFLYFTVFSVN*TDVWKRSLLAIR 105
           +Y+N++  V+ N+  VF  +       T +WK    A+R
Sbjct: 858 VYDNIIGAVNENVGGVFFVYGFGGTGKTFLWKTLSAALR 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,613
Number of Sequences: 28952
Number of extensions: 174903
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)