Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0534
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    71   6e-14
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    27   1.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 71.3 bits (167), Expect = 6e-14
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +3

Query: 255 PAGGGDPILYQHLXXXFGHPEVYILILPGFGIISHII 365
           P GGGDP+LYQHL   FGHPEVYILI+P FG++SHII
Sbjct: 229 PEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 41/83 (49%)
 Frame = +1

Query: 4   HEGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 183
           H G ++DLAI SL L GISS                   S  Q+PLF  A+ IT+     
Sbjct: 145 HSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLL 204

Query: 184 XXXXXAGAITILLTDRNLNTSFF 252
                AG + +L +DRNLNTSF+
Sbjct: 205 TLPVLAGGLFMLFSDRNLNTSFY 227


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 275 WVSSSSRSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 150
           W+  S  S  DV K      +V+A  + GS       +IPTA
Sbjct: 379 WIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTA 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,674
Number of Sequences: 5004
Number of extensions: 18999
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)