Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0534
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    27   6.7  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    27   8.8  
01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    27   8.8  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 272 VSSSSRSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNR 105
           ++ +S+S  D      V+ +  +   T  +N+ KN V  +AH+ K N  NDI  NR
Sbjct: 458 LADASKSNADTNLSSEVDKLSKSCNPTDQNNDEKNDVT-SAHSPKDNMDNDIDDNR 512


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 341 IWYNFSYYFTRERKKRNFWLFRNN 412
           IW  F+   T + K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 261 GGGDPILYQHLXXXFGHPEVYILILPGFGIISH 359
           GGGDP L + L     H  +   ILP  G  S+
Sbjct: 52  GGGDPALERELSRDGSHYSISSAILPSLGARSN 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,598,212
Number of Sequences: 37544
Number of extensions: 109226
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)