Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0534
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39470-3|AAC71120.1|  377|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    27   8.0  

>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 293 IXXFWTS*SLYFNFTRIWYNFSYYFTRERKKRNFWLFRNNLCYTSDWVI 439
           I  F+++       ++   NF  Y  R R+ RN  LF+   C    W I
Sbjct: 248 ITKFYSTPLYTMTLSKTMVNFMIYMIRYRELRNIILFKIIACLPQKWSI 296


>Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical
           protein W07G4.1 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 208 ITILLTDRNLNTSFFDLLEE 267
           IT+++ DR+L T+F D+ E+
Sbjct: 79  ITVVIADRSLTTNFMDITED 98


>U39470-3|AAC71120.1|  377|Caenorhabditis elegans Hypothetical
           protein T08H4.3 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 278 NWVSSSSRSKNDVFKFRSVNNIVIAPAKTGSDNN 177
           N  SSS+ SK+DVF   S+N     P     D+N
Sbjct: 135 NGSSSSTESKSDVFNI-SMNAFAATPGSKSEDHN 167


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 362 YFTRERKKRNFWLFRNNLCYTSDW 433
           +F  E+    FWL    LCY+  W
Sbjct: 145 FFYYEKSSYTFWLVDTPLCYSVSW 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,790,712
Number of Sequences: 27780
Number of extensions: 106554
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)