Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0534
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    27   4.2  
At2g22840.1 68415.m02712 expressed protein identical to transcri...    26   9.8  

>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 275 WVSSSSRSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAH 147
           WV   SR   D F F ++++ V    K G DNN+   + P  H
Sbjct: 162 WVDDKSR---DYFVFCNLSSYVAYHHKRGDDNNSWKVLQPIKH 201


>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 206 APAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNR 105
           A A  GSDNNN  A       +  N S D L NR
Sbjct: 272 AVAMRGSDNNNSLAAAVGTQHHTNNQSTDSLANR 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,300,368
Number of Sequences: 28952
Number of extensions: 93051
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)