Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0533
         (608 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YZG1 Cluster: Putative uncharacterized protein; n=9; ...    34   3.0  
UniRef50_A0E2C1 Cluster: Chromosome undetermined scaffold_74, wh...    33   4.0  

>UniRef50_Q4YZG1 Cluster: Putative uncharacterized protein; n=9;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1081

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 406 NILCYFKVYNWPYLFK-Y*VNHFKKKTYPNSNRHYF*HNIISMSMYKTCFFXYFF*NLIV 230
           N++CYF +YN+PYL K +  +   ++ Y N  R  +    I  + Y    F YF  N+I 
Sbjct: 335 NVICYFFIYNYPYLCKIFQGDKNFEELYMNFIRILYIDINIIKTYYNYKIFIYFI-NIIQ 393

Query: 229 RHR 221
            +R
Sbjct: 394 ENR 396


>UniRef50_A0E2C1 Cluster: Chromosome undetermined scaffold_74, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_74,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 560

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 513 KYALQYNALFTK--LRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGL 370
           ++ L + +L+ K  LRN YI  ++     Y + K INST  V+S+C T L
Sbjct: 317 EFKLNFESLYDKIKLRNSYIQQSVIDYNQYISKKCINSTLMVSSQCNTNL 366


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,389,574
Number of Sequences: 1657284
Number of extensions: 10861011
Number of successful extensions: 21919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21912
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)