Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0533
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   8.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.7  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 602  QYGYSNSNKTGDYKHDRSRDVTLRYIFFKQNMHSNIMH 489
            +Y  + S +  DYK     + +L YI F  N+H  I H
Sbjct: 1141 KYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQH 1178


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -2

Query: 238 LIVRHRHKVPNKSLNIFWVKLRKL 167
           L+VRH+H++ ++  + F+ K+ ++
Sbjct: 43  LVVRHKHELVDRKTSEFYAKIARI 66


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  IYYFNCMLDFYYFVIAIYIKWRQNIRIV*SVIH 119
           I+YF  +   Y FV  IY  W  ++ ++   IH
Sbjct: 350 IFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIH 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,849
Number of Sequences: 5004
Number of extensions: 53901
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)