Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0533
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    27   7.9  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    27   7.9  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    27   7.9  

>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 147 FKYNSCIHNCV*HFILYEYSDAILYKWR 64
           F++  C++NCV H+  +   D  L+ W+
Sbjct: 443 FEFKECVNNCVKHYREFRKKDVRLFSWQ 470


>Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical
           protein C33A12.10 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 370 YLFKY*VNHFKKKTYPNSNRHYF*HNIISMSMYKTCFFXYFF*NLIVR 227
           Y+FK  +    KK+ P  N+H F   +IS+S + TCF  +    L+ R
Sbjct: 50  YIFKIYLTSNWKKSEPGKNQHVF--LVISLSQF-TCFLLFLTDFLMTR 94


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 510 YALQYNALFTKLRNVYILFNIAVITMYKTCKHINS 406
           YA+  +  F  L NVY+L+N A  T     KHI+S
Sbjct: 12  YAIVISLFF--LLNVYLLYNTAQHTQVGNSKHISS 44


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 510 YALQYNALFTKLRNVYILFNIAVITMYKTCKHINS 406
           YA+  +  F  L NVY+L+N A  T     KHI+S
Sbjct: 12  YAIVISLFF--LLNVYLLYNTAQHTQVGNSKHISS 44


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 510 YALQYNALFTKLRNVYILFNIAVITMYKTCKHINS 406
           YA+  +  F  L NVY+L+N A  T     KHI+S
Sbjct: 12  YAIVISLFF--LLNVYLLYNTAQHTQVGNSKHISS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,822
Number of Sequences: 27780
Number of extensions: 289809
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)