Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0532
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    99   4e-20
UniRef50_Q1FN47 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_P62378 Cluster: Ribonuclease P protein component 4; n=4...    32   9.6  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =   99 bits (238), Expect = 4e-20
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = -2

Query: 154  RLWNELPSTVFPERYNMSFFKRGLWRVLSGRQRLSSAPGIVEVHGRR 14
            RLWNELPSTVFPERY+MSFFKRGLWRVLSGRQRL SAPGI EVHGRR
Sbjct: 940  RLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q1FN47 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 338

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 615 IPLISYSYNTFT*NTFNIIY*YVKQKFCIPFYENCATEEY-EISQTYREYREGVQNVNIF 439
           +P+ SY+Y  F      + Y        + +Y    TEEY E+ + Y  YR G  N+N F
Sbjct: 212 MPITSYAYERFGETALALSYAARPDIAFLSYYHVVPTEEYFEMLRQYARYRLGAMNIN-F 270

Query: 438 *CIKTH*INKEALHTL 391
               T  I    +H L
Sbjct: 271 HASNTKLIVDNDIHAL 286


>UniRef50_P62378 Cluster: Ribonuclease P protein component 4; n=4;
           Methanococcus|Rep: Ribonuclease P protein component 4 -
           Methanococcus maripaludis
          Length = 110

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 545 SKNFVFLFTKIARRRSMKFPK-LIENIEKECRMLISFNA*KHIKSIKKHYTH 393
           SKN+V L  KIA R  M +PK     I K C   + +     +++  K+Y H
Sbjct: 38  SKNYVLLGKKIAMRMRMPYPKEWKRRICKNCGSFLIYGKNARVRTKAKNYPH 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,379,653
Number of Sequences: 1657284
Number of extensions: 9532999
Number of successful extensions: 16979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16976
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)