Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0532
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.8  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.8  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 519  ENCATEEYEISQTYREYREGVQNV 448
            E CA EE E   T+  Y E V+N+
Sbjct: 1842 EKCAAEEKEKQATFDNYSEKVENL 1865


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 272 DINKDKQYLIYSQFDHRL*AIRKV*Q 349
           DIN +  YLIY  +D R   I +V Q
Sbjct: 375 DINDNSSYLIYKNYDSRYPLIDEVIQ 400


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 517 FVKRNTKFLLHVLIYNIKSILSKCIVRIGN*RYS 618
           F+ +N  F L  L+Y +++  S+CI  IG  ++S
Sbjct: 496 FLFKNLMFGLRALMYGLRTCKSRCI-EIGGEQFS 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,815
Number of Sequences: 5004
Number of extensions: 43484
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)