Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0532
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   28   5.3  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.0  
SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25)           27   9.3  

>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 199 KYNLNSVQTYNFN*FRLWNELPSTVFPERYNM-SFFKRGLWRVLSGRQRLSSAP 41
           +YN+ S+ T      R+W E+PS V  +RY M + F+  +   L G +   S P
Sbjct: 49  RYNIGSLNTLKQ--LRIWREVPSGVH-KRYEMNATFRTNMKAALCGGESPGSNP 99


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 153  GYGMSSPPRCFLSATTCPSLKEAC 82
            GY + +P RC LS  +C S + AC
Sbjct: 2152 GYRLENPYRCVLSNASCASSEFAC 2175


>SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 112 YNMSFFKRGLWRVLSGRQRLSSAPGIV 32
           Y +S F  G W ++  R+ LS+APG++
Sbjct: 148 YILSCFFNGTWIIIWQRKYLSAAPGVL 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,321
Number of Sequences: 59808
Number of extensions: 297955
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)