Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0531
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 438 CRLSTHHYWCSCLWSYEG 491
           C+  T HY C C + Y G
Sbjct: 76  CQDHTTHYTCHCPYGYTG 93


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 47  QVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 190
           + +FK       + +A+K +VV+DK K  + +  + + +   D  C +
Sbjct: 198 KTRFKTINNILENLWAKKLIVVKDKKKSRSDEQTIDICMRCHDQLCDM 245


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 512 LSPPSTAPFIAPKT 471
           L+PP++ P ++PK+
Sbjct: 106 LTPPNSEPLVSPKS 119


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 477 WSYEGCC*RWAQCSSFHQK 533
           WS       W  CSSF Q+
Sbjct: 403 WSVNAGMWMWLSCSSFFQQ 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,899
Number of Sequences: 336
Number of extensions: 3403
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)