Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0531
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   128   8e-31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   128   8e-31
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   4.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  128 bits (308), Expect = 8e-31
 Identities = 54/83 (65%), Positives = 67/83 (80%)
 Frame = +2

Query: 5   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 184
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 185 QVAYSRIEGDHIVCAAYSHELPR 253
           Q+  SR+ GD+++  A+S ELPR
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPR 85



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 44/101 (43%), Positives = 58/101 (57%)
 Frame = +1

Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
           +G+K GL N+ AAY+TG                              E +++GP  F+ +
Sbjct: 86  YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVF 145

Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAD 555
           LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D +
Sbjct: 146 LDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIE 186


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  128 bits (308), Expect = 8e-31
 Identities = 54/83 (65%), Positives = 67/83 (80%)
 Frame = +2

Query: 5   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 184
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 185 QVAYSRIEGDHIVCAAYSHELPR 253
           Q+  SR+ GD+++  A+S ELPR
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPR 85



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 44/101 (43%), Positives = 58/101 (57%)
 Frame = +1

Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
           +G+K GL N+ AAY+TG                              E +++GP  F+ +
Sbjct: 86  YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVF 145

Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAD 555
           LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D +
Sbjct: 146 LDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIE 186


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 512 LSPPSTAPFIAPKTRAPVVVRAKPTS 435
           LS P TAP I+P +    +V+ +PTS
Sbjct: 263 LSSPETAPNISPVSPFAQLVKLEPTS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,346
Number of Sequences: 5004
Number of extensions: 52278
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)