Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0531
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 121 5e-28
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 118 3e-27
02_04_0381 - 22497519-22497769,22498157-22498247 29 2.2
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 29 3.8
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 6.7
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 8.9
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 8.9
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 121 bits (291), Expect = 5e-28
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +2
Query: 2 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 181
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 182 CQVAYSRIEGDHIVCAAYSHELPR 253
Q+ Y+ I GD ++ AAYSHELPR
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPR 83
Score = 97.9 bits (233), Expect = 6e-21
Identities = 51/103 (49%), Positives = 60/103 (58%)
Frame = +1
Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
+G++VGLTNYAAAY TG +Y VEP D FR
Sbjct: 84 YGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRAL 142
Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ D K
Sbjct: 143 LDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 118 bits (285), Expect = 3e-27
Identities = 55/84 (65%), Positives = 64/84 (76%)
Frame = +2
Query: 2 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 181
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 182 CQVAYSRIEGDHIVCAAYSHELPR 253
Q+ Y+ I GD ++ AAYSHELPR
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPR 83
Score = 97.9 bits (233), Expect = 6e-21
Identities = 51/103 (49%), Positives = 60/103 (58%)
Frame = +1
Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
+G++VGLTNYAAAY TG +Y VEP D FR
Sbjct: 84 YGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRAL 142
Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ D K
Sbjct: 143 LDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 246 CHVWCEGWSDKLCCSIFNWSAISTKTASK 332
C +C+G+ DK CC +WS K SK
Sbjct: 87 CKHYCDGYDDKSCCD--DWSGDCHKCCSK 113
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 28.7 bits (61), Expect = 3.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +3
Query: 231 LIHMSCHVWCEGWSDKLCCSIF 296
++H+ CH+W W++K+ S +
Sbjct: 329 ILHLVCHLWSLDWNEKIILSAY 350
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 125 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 247
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 178 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 5
Y F+G Q +F CV+F+ V N F + P PL Y + L L + E
Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 186 WHVTSLLERRTIRRYLGVLY 127
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,794
Number of Sequences: 37544
Number of extensions: 346261
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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