Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0531
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 135 3e-32
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 111 3e-25
SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05) 29 3.9
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 6.9
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.1
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.1
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 135 bits (326), Expect = 3e-32
Identities = 64/103 (62%), Positives = 71/103 (68%)
Frame = +1
Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
FGVKVGLTNYAAAY TG EYNVE VD PGAFRC+
Sbjct: 118 FGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCF 177
Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPGYD++ K
Sbjct: 178 LDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESK 220
Score = 80.6 bits (190), Expect = 9e-16
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +2
Query: 62 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 187
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 111 bits (268), Expect = 3e-25
Identities = 53/90 (58%), Positives = 59/90 (65%)
Frame = +1
Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
+GVKVGLTNYAAAY TG EYNVE +D PGAFRC+
Sbjct: 23 YGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCF 82
Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPH 522
LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 83 LDVGLARTSTGARVFGALKGAVDGGLEIPH 112
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 188 VAYSRIEGDHIVCAAYSHELPR 253
+AY+++EGD I+CAAY+HELPR
Sbjct: 1 IAYAKLEGDVIICAAYAHELPR 22
>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
Length = 1444
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 275 VRPTFTPNVATH-VNKQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYICSCPEQRGV 99
V TF+P ++ + + Q T LQS S PPG+ + D D+ + + PEQ V
Sbjct: 660 VSGTFSPALSVYGTSAQMTLIPGLQSPSTPPGIPVINLEDCSIDNTKISFAWVPPEQCNV 719
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 149 LIVRLSNKDVTCQVAYSRIEGD-HIVC 226
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 17 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 112
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = -2
Query: 564 TFWICIIARESFDGMRNIEPTVNSTLHSS------KDTSTSSGAC*AYIQITSKCSWSIV 403
T + C+ + E+ DG+ I HSS + +TS G +Y+Q+T CS S V
Sbjct: 157 TIFTCVPSNEAGDGLNKIVTVTVKEFHSSVSIAPARTITTSEG---SYVQMT--CSASAV 211
Query: 402 DRFNIVFI 379
D +I ++
Sbjct: 212 DLSSINWV 219
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 2 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 88
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 155 VRLSNKDVTCQVAYSRIEGDHIVCAAY 235
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 155 VRLSNKDVTCQVAYSRIEGDHIVCAAY 235
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,580
Number of Sequences: 59808
Number of extensions: 423627
Number of successful extensions: 1284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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