Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0531
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   152   2e-37
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    27   8.0  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  152 bits (369), Expect = 2e-37
 Identities = 68/84 (80%), Positives = 76/84 (90%)
 Frame = +2

Query: 2   GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 181
           G VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV 
Sbjct: 2   GLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVV 61

Query: 182 CQVAYSRIEGDHIVCAAYSHELPR 253
            Q+AYS+IEGD +V +AYSHELPR
Sbjct: 62  AQLAYSKIEGDVVVASAYSHELPR 85



 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 48/104 (46%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
 Frame = +1

Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV-DNGPGAFRC 429
           +G+KVGLTNYAAAY+TG                          +YNVE   D  P  F+ 
Sbjct: 86  YGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKA 143

Query: 430 YLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
            LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF G+D + K
Sbjct: 144 VLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESK 187


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 388 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPKS 564
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG      S
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 565 SMLK 576
            ++K
Sbjct: 128 FIIK 131


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 128 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHELPRLV 259
           YN P+YR +++L  K   C+     + GD++   +CA +  EL +L+
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETELHKLM 592


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 233  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 120
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 233  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 120
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 513 IEPTVNSTLHSSKDTSTSSGAC*AYIQITSKCS 415
           +EP V  TL  + DT  +S     + +ITSKC+
Sbjct: 482 LEPVVRWTLQFATDTRYASHVALCFDRITSKCA 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,796
Number of Sequences: 27780
Number of extensions: 306450
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)