Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0531
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   120   1e-27
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   119   2e-27
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   4.2  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   4.2  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                27   9.8  
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   9.8  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/83 (62%), Positives = 65/83 (78%)
 Frame = +2

Query: 5   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 184
           FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 185 QVAYSRIEGDHIVCAAYSHELPR 253
           Q+  + I GD +  +AY+HELP+
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQ 85



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 49/103 (47%), Positives = 61/103 (59%)
 Frame = +1

Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
           +G+ VGLTNYAAAY TG                          +++VEP D+    FR  
Sbjct: 86  YGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRAL 144

Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
           LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  + K
Sbjct: 145 LDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  119 bits (286), Expect = 2e-27
 Identities = 52/83 (62%), Positives = 65/83 (78%)
 Frame = +2

Query: 5   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 184
           FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 185 QVAYSRIEGDHIVCAAYSHELPR 253
           Q+  + I GD +  +AY+HELP+
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQ 85



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 49/103 (47%), Positives = 61/103 (59%)
 Frame = +1

Query: 253 FGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 432
           +G+ VGLTNYAAAY TG                          +++VEP D+    FR  
Sbjct: 86  YGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRAL 144

Query: 433 LDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDADPK 561
           LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  + K
Sbjct: 145 LDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 17  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 190
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 17  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 190
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 506 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS 402
           PP+  P  AP T  P  V   PTS    +AP P S
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSS 73


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 186 WHVTSLLERRTIRRYLGVLYL 124
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,427
Number of Sequences: 28952
Number of extensions: 276195
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)