Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0530
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    32   0.058
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    31   0.10 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.23 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    29   0.71 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.71 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    28   0.94 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.2  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.2  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   3.8  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   5.0  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   6.6  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   8.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +3

Query: 45  SYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNK 224
           SY++ S  P+S  + +P     SAN   ++   +TP+   +  T +S  S     S +  
Sbjct: 522 SYNTSSVLPTSSVSSTPL---SSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITS 578

Query: 225 NTTGPTASLANSNLGS 272
           + +G T    N+N G+
Sbjct: 579 SASGSTGEFTNTNSGN 594



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 25/90 (27%), Positives = 41/90 (45%)
 Frame = +3

Query: 3   TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTIS 182
           TT  SPT       S  S S   SS  + S      +++ + SS   ++ I  SS+ + S
Sbjct: 99  TTSASPTSS-----SLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSS 153

Query: 183 SLDSIYPAXS*LNKNTTGPTASLANSNLGS 272
           +  S   + S  +  +  PT+S  +S+L S
Sbjct: 154 TTSSSLASSSTNSTTSATPTSSATSSSLSS 183



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +3

Query: 45  SYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNK 224
           SY++ S  P+S  + +P     SAN   ++   +TP+  SSV++ ++  +     S +N 
Sbjct: 408 SYNTSSVLPTSSVSSTPL---SSANSTTATSASSTPL--SSVNSTTATSASSTPLSSVNS 462

Query: 225 NTTGPTASLANSNLGS 272
            T    +S   +++ S
Sbjct: 463 TTATSASSTPLTSVNS 478


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 54  SPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSI 197
           +PST  S   + S Y+   S+ +  S +T  T   DSSV T + ++S+
Sbjct: 264 TPSTLSSPASSSSSYLVETSSTLTDSVFTTVTATSDSSVITYTLINSV 311


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 194 YLPGAXLIEQEYNRPDSVLSQLQPRIPIS*PQTGSCPKPRTSSFRLTQSRNTTI 355
           Y P     E+ Y+ P++  S + PR+P   P     PKP      +  S N ++
Sbjct: 567 YTPSVVREEKNYSEPNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSL 620


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 45  SYDSPSTFPSSFEAHSPY-IRPESANILASSYTCATPIGDSSVDTISSLDS 194
           SYDSPS+  +S E +SPY  R  S N   +S+  A+   +  +  I+  DS
Sbjct: 51  SYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDS 101


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 297 EPVCGHEIGIRGWSWLRTLSGLLY 226
           +P+C H+I  +GW +L+ LS  LY
Sbjct: 643 QPICWHKI--KGWGFLKILSSKLY 664


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 28/90 (31%), Positives = 40/90 (44%)
 Frame = +3

Query: 3   TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTIS 182
           T  QSP MQ ++   Y SPS+ P   +  SP   P    + +SS + + P   S  +   
Sbjct: 174 TWSQSP-MQSSL---YVSPSSQP--LDRFSPASFPSKETLTSSSLSSSVPRSVSLSNFAD 227

Query: 183 SLDSIYPAXS*LNKNTTGPTASLANSNLGS 272
           S  S YP  S L     G    + ++ LGS
Sbjct: 228 SNTSNYPESSLLPAAKVGNNGFVGSNVLGS 257


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 12  QSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSL 188
           +S T   + + +   PS+ P+S +A+SP +   S +I +  YT +  + + S D +S L
Sbjct: 270 KSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSVPYT-SNIVENPSEDNLSPL 327


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 159 DSSVDTISSLDSIYPAXS*LNKNTTGPTASLANSNLGSQFRDHRRVPAQSHEPPHSD 329
           ++  D I+++D +YP        +  P  S +   L +    HRR+      PP  D
Sbjct: 211 NTDTDVITNIDQVYPVGVFAQITSIFPAKSGSEPALTAVLYPHRRIRITELIPPKED 267


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 231 TGPTASLANSNLGSQFRDHRRVPAQSHEPPHSD 329
           +G TAS ++  L  QFR   R P  SHEP +++
Sbjct: 35  SGNTASSSSPTL--QFRPTSRYPTLSHEPVYTN 65


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 283 SRNWDPRLELAKDAVGPVVFLFN 215
           SR+  P L  ++DAVGP  FL +
Sbjct: 6   SRSQSPELSQSEDAVGPCPFLIS 28


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/82 (25%), Positives = 40/82 (48%)
 Frame = +3

Query: 3   TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTIS 182
           ++  S T+  + + +   PST  SS    S  +   S++  ASS + ++ I  SS  + S
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSS-LSSSSSSSTASSSSSSSSIISSSSSSSS 281

Query: 183 SLDSIYPAXS*LNKNTTGPTAS 248
           S  S     S  + +++ PT++
Sbjct: 282 SPTSTSSTISSSSSSSSSPTST 303


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 42  RSYDSPSTFPSSFEAHSPYIRPESANILASSYT--CATPIGDSSVD 173
           R   SP    S F   SP++ P+SAN   S Y       + +S+VD
Sbjct: 136 RDQPSPLAEVSDFAISSPHVYPKSANSHDSHYEQFANNDVTESAVD 181


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 280 VTTDGFLPKATNLLIP-IDAE--QEYYDPDVNYNLAS 381
           ++ DGF PK  ++L+P +DAE      DP +   LA+
Sbjct: 187 ISLDGFWPKVQDVLVPLLDAELGSTVTDPAIFRKLAA 223


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 610 YKEDKANYN*TVILYFEFYIQSLKYTYTCRKKFWPDKNEL*STDVSETKRDTHRS 446
           +++D AN       +   YI   KYT    +KF+ + N+    D SE + D   S
Sbjct: 684 WEDDLANARFFTRFFRVIYIVLSKYTQWTTQKFFEEANK--QDDTSEVQNDNSSS 736


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 501 KMNCDRRMCPKLNETPIVQAVVDFSLCICSRSGISMALL 385
           + N D  +C +L++TP++++V+  +   C   G  + LL
Sbjct: 269 RANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVLELL 307


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 48  YDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNKN 227
           Y  P T  ++ +A + +      +    S T      DSS   +SS DS+  + S  N +
Sbjct: 122 YSVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSSDSVSTSASSSNAS 181

Query: 228 TTGPTASLANSN 263
            T    S A+S+
Sbjct: 182 NTVSVTSPASSS 193


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 212 LIEQEYNRPDSVLSQLQPRI 271
           L+EQ Y+ P  +LSQ++ R+
Sbjct: 889 LVEQAYDNPHEMLSQIKRRL 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,905
Number of Sequences: 5004
Number of extensions: 59134
Number of successful extensions: 198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)