Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0530
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1288 + 29014144-29014376,29015192-29015771,29015929-290163... 39 0.003
06_01_0364 + 2591861-2593285 30 1.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 1.3
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944... 30 1.7
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 28 6.8
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 27 9.0
10_02_0130 + 5592305-5592913 27 9.0
01_05_0161 - 18757122-18757331,18757931-18758488 27 9.0
01_04_0020 + 15142402-15143421 27 9.0
>06_03_1288 +
29014144-29014376,29015192-29015771,29015929-29016320,
29016636-29016663,29017207-29017417,29017551-29017819
Length = 570
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +3
Query: 15 SPTMQYNMIRSYDSPSTFPSSFEAHSPYIRP-ESANILASSYTC---ATPIGDSSVDTIS 182
SP + IR ++SPS PS+ + P RP E A +L ++ C A P + +T+S
Sbjct: 80 SPDKRLVGIRPFNSPSQTPSNSQVFQPNRRPTELAPLLVAAGVCFGFADPTTNIIANTLS 139
Query: 183 SLDSIYPAXS*LNKNTTGPTASLANSN 263
SL + A K P+A+ A S+
Sbjct: 140 SLPPDHSAKKRKRKTKAAPSAAAARSS 166
>06_01_0364 + 2591861-2593285
Length = 474
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 316 GSWLWAGTRLWSRNWDPRLELAKDAVGP 233
GSW +AGTRLW PRL +A GP
Sbjct: 427 GSWFFAGTRLW-----PRLLEVVEAAGP 449
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +3
Query: 60 STFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNKNTTGP 239
S F S ++R SA +++S SS LDSI P+ S +NK G
Sbjct: 700 SPFGLSVPGSGTHVRENSAEVVSSRQKQPHREFTSSAPYDPLLDSIEPSSSSINKMDLGR 759
Query: 240 TASLANSN 263
A+L+ SN
Sbjct: 760 EANLSASN 767
>03_06_0631 +
35193737-35193906,35194010-35194076,35194237-35194426,
35194571-35194767
Length = 207
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 339 LCVNRNEEVRGFGQEPVCGHEIGIRGWSWLRTLSGLLYSCSI 214
LC R E V +E +CG E ++ + LR LS L ++C +
Sbjct: 155 LCPTRYEIVHPSEEELLCGKEGDVKDFLRLRNLSPLPFTCPV 196
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 342 LLCVNRNEEVRGFGQEPVCGHEIGIRGWSWLRTLS---GLLYSCSIN 211
LLC +E ++ F EP+ H+ GWS L L+ G L CS N
Sbjct: 264 LLC-GLHESLKVFSWEPIRCHDTVDVGWSRLSDLNVHEGKLLGCSFN 309
>11_01_0533 +
4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 501 KMNCDRRMCPKLNETPIVQAVVDFSLC 421
K++ R +C LN+ P+ + + D+S C
Sbjct: 844 KISASRSLCQLLNQFPLNEVIPDYSQC 870
>10_02_0130 + 5592305-5592913
Length = 202
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 11 AIAYNAVQHDSFLRF-SINIPLFV*STLAIHPTRVREHTRIKLHL 142
A A V ++ LR I+IPL V ++ +HP R + +R +L L
Sbjct: 67 AAAIRDVFREALLRLCGISIPLDVANSFGMHPYREEDDSRCRLRL 111
>01_05_0161 - 18757122-18757331,18757931-18758488
Length = 255
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 30 YNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCAT 149
+N I P+T P+ HSP + SAN A C++
Sbjct: 97 WNAIMQKTRPATAPAMAATHSPPLPLRSANAAAQPAACSS 136
>01_04_0020 + 15142402-15143421
Length = 339
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 STLAIHPTRVREHTR-IKLHLRYADR*FFGGHDFIAGLYLPGAXLIEQEYNRPDSVLSQL 259
+T+ P R TR + LH++ R FGGH + +++P L+ ++ + +
Sbjct: 100 NTVLHFPVPARFDTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAHDGGEPRPASY 159
Query: 260 QPRIPIS 280
Q R P+S
Sbjct: 160 QVRRPMS 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,121
Number of Sequences: 37544
Number of extensions: 396721
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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