Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0530
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9) 33 0.14
SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1) 29 4.0
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 29 4.0
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 5.3
SB_42737| Best HMM Match : PH (HMM E-Value=3.2e-10) 28 5.3
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 28 7.0
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 28 7.0
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.0
>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
Length = 448
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 355 PDVNYNLASNQQCHTYPGSAADAQTKINNG-LNDGCLV*FRTHPSITVHFCRAKISFDTY 531
P + Y+L + + C+ + GSAA T +G + D + HPS V F A I + +
Sbjct: 211 PSLRYSLVTRKVCYHWSGSAAGGATTSKSGTVADSTSTSYPRHPS--VGFATAAIGYRFH 268
Query: 532 TYILSFGY 555
+ F Y
Sbjct: 269 LLLQHFSY 276
>SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = -3
Query: 570 SISNFISKA*NIRIRVERNFGPTKMNCDRRMCPKLNETPIVQAVVDFSLCICSRSGISMA 391
SIS +S + + E P +RR+CP+ V + + CIC R G
Sbjct: 219 SISQVVSITESSAVTTEMFVNPQTPVSERRLCPRCTSPSNYTQVQNVAQCICERCGNEFC 278
Query: 390 LLIARQVIIH 361
R + H
Sbjct: 279 PYCLRDIENH 288
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 18 PTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASS 134
P + S S S+F SSF +H+PYI P S+++L+ S
Sbjct: 1398 PFSSFPTFSSPISLSSF-SSFISHTPYITPPSSSMLSGS 1435
>SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)
Length = 213
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 166 RWTRFHRWTLFTRRXVD*TRIQQARQRP*PTPTSDPNFVTT 288
+W H+W R + T +QA Q P TP++ +T+
Sbjct: 9 KWRNLHKWRSLPERQRNPTAAEQAAQEPARTPSALAERITS 49
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 166 RWTRFHRWTLFTRRXVD*TRIQQARQRP*PTPTSDPNFVTT 288
+W H+W R + T +QA Q P TP++ +T+
Sbjct: 734 KWRNLHKWRSLPERQRNPTAAEQAAQEPARTPSALAERITS 774
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/63 (34%), Positives = 28/63 (44%)
Frame = +1
Query: 40 FVLTILHQHSPLRLKHTRHTSDPSPRTYSHQVTLALRR*VILRWTRFHRWTLFTRRXVD* 219
F TI+H HSP HT + T+SH L R +I + H LFTR +
Sbjct: 240 FTRTIIHTHSP---SHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHS-LLFTRTIIHT 295
Query: 220 TRI 228
T I
Sbjct: 296 TLI 298
>SB_42737| Best HMM Match : PH (HMM E-Value=3.2e-10)
Length = 218
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 102 GCMASVLQTKRGM-LMENRKNESCCT 28
GC+ L+TKRG+ L + ESCCT
Sbjct: 100 GCLKFELKTKRGIHLFKASSAESCCT 125
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 27.9 bits (59), Expect = 7.0
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 18 PTMQYNM-IRSYDSPSTFPSSFEAHSPYIRPES--ANILAS---SYTCATPIGDSSVDTI 179
P QY+ + SY PS++P+S+ A P P S A+ AS SY +P T
Sbjct: 56 PPYQYSAYLASY--PSSYPASYPASYPASYPASYPASYPASYPTSYPYPSPYPAPYPATY 113
Query: 180 SSLDSIYPAXS*LNKNTTGPTASLANSN 263
S+ + YPA + ++ TT T+S ++
Sbjct: 114 SAAPAAYPA-AYVSSATTYDTSSFGGAS 140
>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
Length = 1250
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 472 RTHPSITVHFCRAKISFDTYTYILSFGYKIRNRVSP 579
RTHP+ + H+ A YTY +S YK+ + +P
Sbjct: 600 RTHPA-SPHYSHATSYLCAYTYTMSVSYKLDPQRTP 634
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 15 SPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILA-SSYTCATPIGDSSVDT--ISS 185
SPT Y SP ++P+S A P P S + +SY ++ G++S+ + +S
Sbjct: 445 SPTAAYPAYYPASSPVSYPASSPASYPAFSPASYPASSPASYPASSTAGNASIGSSYVSQ 504
Query: 186 LD 191
+D
Sbjct: 505 VD 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,877,892
Number of Sequences: 59808
Number of extensions: 455762
Number of successful extensions: 1185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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