Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0530
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.7  
Z83108-6|CAB05512.1|  833|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z50070-13|CAA90402.1|  833|Caenorhabditis elegans Hypothetical p...    28   4.6  
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    28   4.6  
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   8.1  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   8.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   8.1  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   8.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   8.1  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 54  SPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNKNTT 233
           S S  PSS    +  I   SA+   S+ +  TP+  SS  TI S    +P+    + +T 
Sbjct: 32  SSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSS-STIQSSSGTFPSSVASSPSTV 90

Query: 234 GPTASLANSN 263
           G T+  A+S+
Sbjct: 91  GSTSGAASSS 100


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 54  SPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNKNTT 233
           S S  PSS    +  I   SA+   S+ +  TP+  SS  TI S    +P+    + +T 
Sbjct: 239 SSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSS-STIQSSSGTFPSSVASSPSTV 297

Query: 234 GPTASLANSN 263
           G T+  A+S+
Sbjct: 298 GSTSGAASSS 307


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 54  SPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAXS*LNKNTT 233
           S S  PSS    +  I   SA+   S+ +  TP+  SS  TI S    +P+    + +T 
Sbjct: 239 SSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSS-STIQSSSGTFPSSVASSPSTV 297

Query: 234 GPTASLANSN 263
           G T+  A+S+
Sbjct: 298 GSTSGAASSS 307


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 303 GQEPVCGHEIGIRGWSWLRTLSGLLYSCS 217
           G  P+ GH+  +   +W  T +GLL SCS
Sbjct: 267 GANPLTGHKKSVEDLAWSPTETGLLASCS 295


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 253  PTPTSDPNFVTTDGFLPKATNLLIPIDAEQEYYD 354
            PTPT +  F +  G    A +++IP D+EQ  YD
Sbjct: 1658 PTPTEEFPFFSKHGDDCSARDVVIPSDSEQNTYD 1691


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSY 137
           +++Q P + Y+M  S  S S+F SSF A + Y   E+ N +   Y
Sbjct: 349 SSQQFPHLNYSMNNSIYSDSSFQSSFSAENSYF-DENGNPIHYPY 392


>Z83108-6|CAB05512.1|  833|Caenorhabditis elegans Hypothetical
           protein F43G6.9 protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 51  DSPSTFPSSFEAHSPYIRPES-ANILASSYTC-ATPIGDSSVDTISSLD 191
           D+  +F SSFEA SP+++     N    +Y    T  G SSV    +LD
Sbjct: 106 DASDSFKSSFEAESPFLKKSIWGNGTDGAYNIWGTNFGISSVPAAPTLD 154


>Z50070-13|CAA90402.1|  833|Caenorhabditis elegans Hypothetical
           protein F43G6.9 protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 51  DSPSTFPSSFEAHSPYIRPES-ANILASSYTC-ATPIGDSSVDTISSLD 191
           D+  +F SSFEA SP+++     N    +Y    T  G SSV    +LD
Sbjct: 106 DASDSFKSSFEAESPFLKKSIWGNGTDGAYNIWGTNFGISSVPAAPTLD 154


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 335 ASIGMRRFVALGRNPSVVTKLGSEV 261
           A  G+R+FV +GRNP  +  + SE+
Sbjct: 109 AKRGLRKFVLIGRNPKKLDSVKSEI 133


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 259 PTSDPNFVTTD-GFLPKATNLLIPIDAEQEYYDPDVNYNLASNQQ 390
           PT++P   T++ G L K + + +      +YY  +V Y + SN+Q
Sbjct: 173 PTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQ 217


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 301 PKATNLLIPIDAEQEYYDPDVNYNLASNQQCHTYPGSAADAQTKINNGLNDGC 459
           PK   +   ID ++  YDPDV     +N   H Y    + A  K +   ND C
Sbjct: 178 PKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMA--KCHESCNDKC 228


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 301 PKATNLLIPIDAEQEYYDPDVNYNLASNQQCHTYPGSAADAQTKINNGLNDGC 459
           PK   +   ID ++  YDPDV     +N   H Y    + A  K +   ND C
Sbjct: 178 PKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMA--KCHESCNDKC 228


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 3     TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCAT 149
             TTR+S T +   +R YD  +   S  +A +  + P S + L+ S+TC T
Sbjct: 12793 TTRKSTTPKMTTLRPYDRKA---SKEDATNIELIPLSPSSLSVSWTCCT 12838


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 301 PKATNLLIPIDAEQEYYDPDVNYNLASNQQCHTYPGSAADAQTKINNGLNDGC 459
           PK   +   ID ++  YDPDV     +N   H Y    + A  K +   ND C
Sbjct: 229 PKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMA--KCHESCNDKC 279


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 3     TTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCAT 149
             TTR+S T +   +R YD  +   S  +A +  + P S + L+ S+TC T
Sbjct: 12793 TTRKSTTPKMTTLRPYDRKA---SKEDATNIELIPLSPSSLSVSWTCCT 12838


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -3

Query: 525  VERNFGPTKMNCDRRMCPKLNETPIVQAVVDFSLCICSRSGISMALLIARQVII 364
            ++   G  K+NCDR    +L+E  I   + D ++  C++S IS  LL  RQ+++
Sbjct: 964  IDHFIGANKVNCDRYFPTELDEKLI---LADLTI-TCTKS-ISKPLLKTRQLLL 1012


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,179
Number of Sequences: 27780
Number of extensions: 341540
Number of successful extensions: 943
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)